Biophysical Interactions and Sensing Lab

We are looking for a PhD student

We are currently offering a fully-funded PhD studentship in the biophysics of virus entry into living cells:

Direct probing of molecular interactions relevant to virus entry via force spectroscopy with optical tweezers in live cells

The main objective of this research project is to uncover new molecular interactions relevant to virus entry into living cells by means of precision force-sensing and fluorescence microscopy experiments at the single molecule level.

The cell membrane is the main barrier that viruses need to overcome to penetrate cells and cause disease. As part of their entry strategy, viruses interact with specific receptor proteins at the cell surface in ways which are not well understood. These cell-surface receptors are typically embedded in the membrane of the cell, where they can move randomly (via Brownian diffusion) in the membrane plane. The physical properties of virus receptors, such as their mobility and anchoring to the cellular cytoskeleton (a mesh of filaments beneath the cell membrane), are likely to have an important role in virus entry. For instance, receptor-cytoskeleton attachments can modify receptor mobility, enable the clustering of receptors on the cell surface and/or stabilise virus-receptor interactions. Our current knowledge of these effects is however very limited to date. This project aims at detecting and characterising molecular attachments between virus receptors and the cellular cytoskeleton in the context of virus entry.

We will focus on the Human Immunodeficiency Virus (HIV) as a model system. HIV particles first attach specifically to receptor molecules CD4 and CCR5/CXCR4 on the surface of cells of the immune system. These receptors then redistribute and accumulate at the sites of virus attachment on the cell surface. Eventually, the virus penetrates the cell membrane and releases its genome into the cellular cytoplasm. Several recent studies have pointed towards the establishment of links between CD4 and CCR5/CXCR4 and the cellular cytoskeleton upon HIV attachment. These links, together with dynamic rearrangements of the cytoskeleton would be responsible for the receptor redistribution and clustering required for HIV entry. However, the proposed links have not been observed directly to date and the mechanisms for clustering remain unknown. We will first measure receptor mobility and receptor-cytoskeleton attachments in lymphocytes (and model cells) in the absence of viruses to understand the baseline biophysical properties of the HIV receptors. Following this, we will investigate changes in receptor properties upon virus engagement to find out more about the mechanisms and dynamics of virus entry.

Optical tweezers will be used to pull individual receptor molecules on the surface of living cells while precisely detecting forces at the picoNewton level and displacements at the nanometer scale. Novel sequential data acquisition and real-time data analysis methods will be developed to allow the controlled measurement of molecular interactions near the cell surface. Comparing force measurements on cells displaying HIV receptors and different candidate linker proteins will enable us to probe receptor-cytoskeleton interactions for the first time and understand their role in virus entry. Force spectroscopy measurements will be complemented with receptor mobility measurements using single-molecule light-sheet fluorescence microscopy and single particle tracking. Our results will form the basis of future investigations into HIV entry and into other virus-receptor systems that exhibit similar entry mechanisms, potentially opening new avenues for anti-viral drug design, ultimately generating benefits to human health and positive societal and economic impact.

Apart from the above mentioned biophysical approaches you will make use of other advanced fluorescence microscopy techniques, image processing and single-particle-tracking; various biochemical and cell and molecular biology techniques, e.g., cell culture, fluorescence labelling of cell-surface receptors, particle-functionalization techniques for specific attachment of micro-beads to the receptors of interest for force sensing experiments; programming for controlling equipment, modeling binding interactions in solution,  etc.

You will work in a multi-disciplinary environment under the supervision of Dr. Isabel Llorente-García in the Biological Physics Group within the Dept. of Physics and Astronomy at University College London, UK. You will benefit from close collaboration with Prof. Mark Marsh, MRC LMCB, and will have access to all LMCB core facilities (light microscopy, EM, super-resolution imaging, etc). Additionally, you will have the opportunity of collaborating with Prof. Sonia Contera (Dept. of Physics, Oxford University). As a student, you will be part of the Advanced Characterisation of Materials Centre for Doctoral Training (http://cdt-acm.org/), funded by the EPSRC for a partnership between University College London (UCL) and Imperial College London, benefiting from training in a wide range of techniques.

Applying

Candidates should have a high grade point average MSci or Master’s degree (or equivalent) in physics, engineering, quantitative life sciences or similar, with physics experience an added bonus. Previous experience in experimental research, optics and programming are highly desirable, along with an interest in biological physics.

The stipend is approx. £16,785 p.a. for 3.5-4 years, and tuition fees will be covered. Funding is available to UK/EU/EEA candidates. Suitably qualified and eligible candidates should send their application with cover letter, CV and transcript of records/grades to Dr Isabel Llorente-García (i.llorente-garcia@ucl.ac.uk), including two references (at least one of these academic), highlighting academic excellence and previous research experience.

Application deadline: 31st-January-2018.

Suggested background reading:

The cell biology of receptor-mediated virus entry, J. Grove and M. Marsh, J. Cell Biol. 195, 1071 (2011).

 

Advertisements

Today we showed our lab to Physics undergraduates attending the Conference of Astronomy and Physics Students (CAPS’17) at UCL

On 29-June-2017, we have had four groups of undergraduate students touring our lab and learning about our Biophysics research. Approx. 20 Physics undergraduate and masters students attending the annual Conference of Astronomy and Physics Students (CAPS’17) at UCL passed by and PhD students Johnny Nguyen and Dario Conca, together with project student Basile Khatir, explained their experiments to them:

We welcome project student Basile Khatir

On May 22nd 2017 we welcomed Basile Khatir, a student from the Institut d’Optique Graduate School in Paris, France.

Basile is joining us for three months to work on a project entitled “Whispering-gallery-mode biosensors for early diagnosis of disease“. For this project, our lab collaborates with Prof. Peter Barker and Dr. Lia Li at UCL Physics.

20170626_BasileKhatirMastersStudent